cwltool.workflow

Module Contents

Classes

Workflow	Base class for get_requirement().
WorkflowStep	Base class for get_requirement().

Functions

default_make_tool(toolpath_object, loadingContext)
used_by_step(step, shortinputid)

Attributes

default_make_tool(toolpath_object, loadingContext)

cwltool.workflow.default_make_tool(toolpath_object, loadingContext)

Parameters

• toolpath_object (ruamel.yaml.comments.CommentedMap) –

• loadingContext (cwltool.context.LoadingContext) –

Return type

cwltool.process.Process

cwltool.workflow.default_make_tool

Parameters

• toolpath_object (ruamel.yaml.comments.CommentedMap) –

• loadingContext (cwltool.context.LoadingContext) –

Return type

cwltool.process.Process

class cwltool.workflow.Workflow(toolpath_object, loadingContext)

Bases: cwltool.process.Process

Base class for get_requirement().

Parameters

• toolpath_object (ruamel.yaml.comments.CommentedMap) –

• loadingContext (cwltool.context.LoadingContext) –

make_workflow_step(self, toolpath_object, pos, loadingContext, parentworkflowProv=None)

Parameters

• toolpath_object (ruamel.yaml.comments.CommentedMap) –

• pos (int) –

• loadingContext (cwltool.context.LoadingContext) –

• parentworkflowProv (Optional[cwltool.provenance_profile.ProvenanceProfile]) –

Return type

WorkflowStep

job(self, job_order, output_callbacks, runtimeContext)

Parameters

• job_order (cwltool.utils.CWLObjectType) –

• output_callbacks (Optional[cwltool.utils.OutputCallbackType]) –

• runtimeContext (cwltool.context.RuntimeContext) –

Return type

cwltool.utils.JobsGeneratorType

visit(self, op)

Parameters

op (Callable[[ruamel.yaml.comments.CommentedMap], None]) –

Return type

None

cwltool.workflow.used_by_step(step, shortinputid)

Parameters

• step (cwltool.utils.StepType) –

• shortinputid (str) –

Return type

bool

class cwltool.workflow.WorkflowStep(toolpath_object, pos, loadingContext, parentworkflowProv=None)

Bases: cwltool.process.Process

Base class for get_requirement().

Parameters

• toolpath_object (ruamel.yaml.comments.CommentedMap) –

• pos (int) –

• loadingContext (cwltool.context.LoadingContext) –

• parentworkflowProv (Optional[cwltool.provenance_profile.ProvenanceProfile]) –

receive_output(self, output_callback, jobout, processStatus)

Parameters

• output_callback (cwltool.utils.OutputCallbackType) –

• jobout (cwltool.utils.CWLObjectType) –

• processStatus (str) –

Return type

None

job(self, job_order, output_callbacks, runtimeContext)

Initialize sub-workflow as a step in the parent profile.

Parameters

• job_order (cwltool.utils.CWLObjectType) –

• output_callbacks (Optional[cwltool.utils.OutputCallbackType]) –

• runtimeContext (cwltool.context.RuntimeContext) –

Return type

cwltool.utils.JobsGeneratorType

visit(self, op)

Parameters

op (Callable[[ruamel.yaml.comments.CommentedMap], None]) –

Return type

None