cwltool.update

Module Contents

Functions

v1_1to1_2(doc, loader, baseuri)

Public updater for v1.1 to v1.2.

v1_0to1_1(doc, loader, baseuri)

Public updater for v1.0 to v1.1.

v1_1_0dev1to1_1(doc, loader, baseuri)

Public updater for v1.1.0-dev1 to v1.1.

v1_2_0dev1todev2(doc, loader, baseuri)

Public updater for v1.2.0-dev1 to v1.2.0-dev2.

v1_2_0dev2todev3(doc, loader, baseuri)

Public updater for v1.2.0-dev2 to v1.2.0-dev3.

v1_2_0dev3todev4(doc, loader, baseuri)

Public updater for v1.2.0-dev3 to v1.2.0-dev4.

v1_2_0dev4todev5(doc, loader, baseuri)

Public updater for v1.2.0-dev4 to v1.2.0-dev5.

v1_2_0dev5to1_2(doc, loader, baseuri)

Public updater for v1.2.0-dev5 to v1.2.

identity(doc, loader, baseuri)

Do-nothing, CWL document upgrade function.

checkversion(doc, metadata, enable_dev)

Check the validity of the version of the give CWL document.

update(doc, loader, baseuri, enable_dev, metadata, update_to = None)

Update a CWL document to 'update_to' (if provided) or INTERNAL_VERSION.

Attributes

ORDERED_VERSIONS

UPDATES

DEVUPDATES

ALLUPDATES

INTERNAL_VERSION

ORIGINAL_CWLVERSION

cwltool.update.v1_1to1_2(doc, loader, baseuri)

Public updater for v1.1 to v1.2.

Parameters

  • doc (ruamel.yaml.comments.CommentedMap) –

  • loader (schema_salad.ref_resolver.Loader) –

  • baseuri (str) –

Return type

Tuple[ruamel.yaml.comments.CommentedMap, str]

cwltool.update.v1_0to1_1(doc, loader, baseuri)

Public updater for v1.0 to v1.1.

Parameters

  • doc (ruamel.yaml.comments.CommentedMap) –

  • loader (schema_salad.ref_resolver.Loader) –

  • baseuri (str) –

Return type

Tuple[ruamel.yaml.comments.CommentedMap, str]

cwltool.update.v1_1_0dev1to1_1(doc, loader, baseuri)

Public updater for v1.1.0-dev1 to v1.1.

Parameters

  • doc (ruamel.yaml.comments.CommentedMap) –

  • loader (schema_salad.ref_resolver.Loader) –

  • baseuri (str) –

Return type

Tuple[ruamel.yaml.comments.CommentedMap, str]

cwltool.update.v1_2_0dev1todev2(doc, loader, baseuri)

Public updater for v1.2.0-dev1 to v1.2.0-dev2.

Parameters

  • doc (ruamel.yaml.comments.CommentedMap) –

  • loader (schema_salad.ref_resolver.Loader) –

  • baseuri (str) –

Return type

Tuple[ruamel.yaml.comments.CommentedMap, str]

cwltool.update.v1_2_0dev2todev3(doc, loader, baseuri)

Public updater for v1.2.0-dev2 to v1.2.0-dev3.

Parameters

  • doc (ruamel.yaml.comments.CommentedMap) –

  • loader (schema_salad.ref_resolver.Loader) –

  • baseuri (str) –

Return type

Tuple[ruamel.yaml.comments.CommentedMap, str]

cwltool.update.v1_2_0dev3todev4(doc, loader, baseuri)

Public updater for v1.2.0-dev3 to v1.2.0-dev4.

Parameters

  • doc (ruamel.yaml.comments.CommentedMap) –

  • loader (schema_salad.ref_resolver.Loader) –

  • baseuri (str) –

Return type

Tuple[ruamel.yaml.comments.CommentedMap, str]

cwltool.update.v1_2_0dev4todev5(doc, loader, baseuri)

Public updater for v1.2.0-dev4 to v1.2.0-dev5.

Parameters

  • doc (ruamel.yaml.comments.CommentedMap) –

  • loader (schema_salad.ref_resolver.Loader) –

  • baseuri (str) –

Return type

Tuple[ruamel.yaml.comments.CommentedMap, str]

cwltool.update.v1_2_0dev5to1_2(doc, loader, baseuri)

Public updater for v1.2.0-dev5 to v1.2.

Parameters

  • doc (ruamel.yaml.comments.CommentedMap) –

  • loader (schema_salad.ref_resolver.Loader) –

  • baseuri (str) –

Return type

Tuple[ruamel.yaml.comments.CommentedMap, str]

cwltool.update.ORDERED_VERSIONS = ['v1.0', 'v1.1.0-dev1', 'v1.1', 'v1.2.0-dev1', 'v1.2.0-dev2', 'v1.2.0-dev3', 'v1.2.0-dev4',...
cwltool.update.UPDATES :Dict[str, Optional[Callable[[CommentedMap, Loader, str], Tuple[CommentedMap, str]]]]
cwltool.update.DEVUPDATES :Dict[str, Optional[Callable[[CommentedMap, Loader, str], Tuple[CommentedMap, str]]]]
cwltool.update.ALLUPDATES
cwltool.update.INTERNAL_VERSION = v1.2
cwltool.update.ORIGINAL_CWLVERSION = http://commonwl.org/cwltool#original_cwlVersion
cwltool.update.identity(doc, loader, baseuri)

Do-nothing, CWL document upgrade function.

Parameters

  • doc (ruamel.yaml.comments.CommentedMap) –

  • loader (schema_salad.ref_resolver.Loader) –

  • baseuri (str) –

Return type

Tuple[ruamel.yaml.comments.CommentedMap, str]

cwltool.update.checkversion(doc, metadata, enable_dev)

Check the validity of the version of the give CWL document.

Returns the document and the validated version string.

Parameters

  • doc (Union[ruamel.yaml.comments.CommentedSeq, ruamel.yaml.comments.CommentedMap]) –

  • metadata (ruamel.yaml.comments.CommentedMap) –

  • enable_dev (bool) –

Return type

Tuple[ruamel.yaml.comments.CommentedMap, str]

cwltool.update.update(doc, loader, baseuri, enable_dev, metadata, update_to=None)

Update a CWL document to ‘update_to’ (if provided) or INTERNAL_VERSION.

Parameters

  • doc (Union[ruamel.yaml.comments.CommentedSeq, ruamel.yaml.comments.CommentedMap]) –

  • loader (schema_salad.ref_resolver.Loader) –

  • baseuri (str) –

  • enable_dev (bool) –

  • metadata (ruamel.yaml.comments.CommentedMap) –

  • update_to (Optional[str]) –

Return type

ruamel.yaml.comments.CommentedMap