Common Workflow Language reference implementation
Contents:
cwltool Command Line Options
cwltool
Loops
The loop condition
The loop field
Loop output modes
Loop-independent iterations
Provenance capture
Who executed the workflow?
CWLProv folder structure
Research Object manifest
PROV profile
CWLPROV namespaces
Account who launched cwltool
Starting a workflow
Running workflow steps
Data inputs (usage)
Data outputs (generation)
Ending the workflow
Python version support policy
Process generator
Example runs
API Reference
cwltool
Submodules
cwltool.__main__
cwltool.argparser
cwltool.builder
cwltool.checker
cwltool.command_line_tool
cwltool.context
cwltool.cuda
cwltool.cwlprov
cwltool.cwlrdf
cwltool.cwlviewer
cwltool.docker
cwltool.docker_id
cwltool.env_to_stdout
cwltool.errors
cwltool.executors
cwltool.factory
cwltool.flatten
cwltool.job
cwltool.load_tool
cwltool.loghandler
cwltool.main
cwltool.mpi
cwltool.mutation
cwltool.pack
cwltool.pathmapper
cwltool.process
cwltool.procgenerator
cwltool.resolver
cwltool.run_job
cwltool.secrets
cwltool.singularity
cwltool.singularity_utils
cwltool.software_requirements
cwltool.stdfsaccess
cwltool.subgraph
cwltool.task_queue
cwltool.udocker
cwltool.update
cwltool.utils
cwltool.validate_js
cwltool.workflow
cwltool.workflow_job
Attributes
Package Contents
__author__
CWL_CONTENT_TYPES
Common Workflow Language reference implementation
API Reference
cwltool
cwltool.__main__
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cwltool.__main__
Default entrypoint for the cwltool module.